New Features:

1. Alignment Maps
2. Likelihood computation using estimator for both TAB08 & KSA00 models
3. Map reconstruction using SA for both TAB08 & KSA00.

Jobs Added:

Data Set

Modify existing data set and create new data set.

1. When a job is run, the URL of the data set is given in the output 

   window

2. Use Favorites to add the folder/file. Edit the data set and run 

   jobs using the drop-down data combo box.

3. Create a copy of the data set in the Favorites window; restart 

   application to see the data in the drop-down data combo box.

    

Simulated Annealing

Simulated Annealing (SA) for both genetic (TAB08) and physical (KSA00) 
model.

1. Turn on/off the log
2. Cross-counts (between start & best orders) in the output window

Likelihood using Estimator

Likelihood is computed for the data at the estimated model 
(from the same data). Choice of estimators is available 
from a drop-down combobox.

Alignment Maps

1. Multiple maps can be added by editing the model .xml file
2. Cross counts are reported in the output window