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New Features:
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Release Notes Demo/Screenshots Download Road Map
Publication: An open-source and scalable framework for exact calculations in coalescent theory BMC Bioinformatics (2012) 13:257
New Features:
Data support.
- Maximum Likelihood Estimation (MLE)
- Modify existing data set and create new data set.
Jobs Added:
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Feature Details:
Alignment Maps
Multiple maps can be added by editing the model .xml file.Cross counts are reported in the output window.
Likelihood using Estimator
Likelihood is computed for the data at the estimated model (from the same data).Choice of estimators in a drop-down combo box
Data Set
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Maximum Likelihood Estimation (MLE)
For Infinite-Alleles Model.
Data support
Jobs can select data from a drop-down combo box. Only relevant data sets are shown. The application is preloaded with data sets.
Data Life Cycle
When a job is run, the URL of the data set is given in the outputwindow.
Use Favorites to add the folder/file. Edit the data set and runjobs using the
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drop-down data combo box.Create a copy of the data set in the Favorites window; restartapplication to
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see the data in the drop-down data combo box.
Simulated Annealing
Simulated Annealing (SA) for both genetic (TAB08) and physical (KSA00) model.Turn on/off the logCross-counts (between start & best orders) in the output window.
Release Notes
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Coalescent 1.4.0:Bug
Design
Feature
Refactor
Task
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Commons 1.2.2:
Feature
- [COMMONS-61] - Likelihood with Estimators
- [COMMONS-62] - Compute Model Likelihood
- [COMMONS-63] - Model Estimation
- [COMMONS-67] - Key-Value Combo Builder Property
Task
For Infinite-Sites Model
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