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Publication: An open-source and scalable framework for exact calculations in coalescent theory  BMC Bioinformatics (2012) 13:257
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New Features:

  1. Data support.

  2. Maximum Likelihood Estimation (MLE)
  3. Modify existing data set and create new data set.

Jobs Added:

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Feature Details:

Data support

Jobs can select data from a drop-down combo box. Only relevant data sets are shown. The application is preloaded with data sets.

Maximum Likelihood Estimation (MLE)

  1. For Infinite-Alleles Model.

  2. For Infinite-Sites Model

Data Set

Modify existing data set and create new data set.
  1. When a job is run, the URL of the data set is given in the output window
  2. Use Favorites to add the folder/file. Edit the data set and run jobs using the 
    drop-down data combo box.
  3. Create a copy of the data set in the Favorites window; restart application to 
    see the data in the drop-down data combo box.

Release Notes

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Issues Coalescent 1.4.0:

Bug

Design

Feature

Refactor

Task

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Issues Commons 1.2.2:

Feature

Task