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Scalable Framework for Importance Sampling (
infiniteInfinite-
sites modelSites) in Population Genetics
Dec 10May 13,
20132014
a Reproducible Research as Championed by Victoria Stodden
cumulative
Features:
- Importance Sampling using Multiple Proposals
- run sampler by size or time
- compute likelihood
- compute MLE
- multi-core ready
Importance Sampling (IS)
- Likelihood
- MLE
- Proposals-MultiThreaded
- Computational efficiency for IS (via SD vs HAW)
General
- Marker for new/improved jobs
XML editor w/ Schema support;
- Model based Data (API)
- nb701 (platform-ide) from src
Phylogeny
- gene tree diagram improvements:
- save layout (automatically)
- no scrollpane; key bindings for mode; help on right-click
- drawing code refactored
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The brown dog jumped over the black fox. The brown dog jumped over the black fox. The brown dog jumped over the black fox. |
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